[PRE REVIEW]: Pigeons.jl: Distributed sampling from intractable distributions

[whedon]

Submitting author: @nikola-sur (Nikola Surjanovic)
Repository: https://github.com/Julia-Tempering/Pigeons-Paper
Version:
Editor: @pitsianis
Reviewers: @nsailor, @georgebisbas
Managing EiC: Mathieu Besançon

Author instructions

Thanks for submitting your paper to JCON @nikola-sur. Currently, there isn't an JCON editor assigned to your paper.

The author's suggestion for the handling editor is @pitsianis.

@nikola-sur if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JCON and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JCON submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

[whedon]

Failed to discover a Statement of need section in paper

[whedon]

Wordcount for paper.tex is 278

[whedon]

Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.04 s (809.0 files/s, 161022.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
TeX                             16            520            361           4393
Julia                           10             55             45            298
Ruby                             1              8              4             45
YAML                             1              1              0             30
TOML                             1              0              0             12
-------------------------------------------------------------------------------
SUM:                            29            584            410           4778
-------------------------------------------------------------------------------


Statistical information for the repository 'beac6c9c6fad6941d723d437' was
gathered on 2023/10/30.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Nikola Surjanovic                1            57              0          100.00

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
Nikola Surjanovic            57          100.0          0.0                7.02

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'xifthen.sty' from line
  '! LaTeX Error: File `xifthen.sty' not found.'
Latexmk: Missing input file: 'xifthen.sty' from line
  '! LaTeX Error: File `xifthen.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[whedon]

Failed to discover a valid open source license.

[whedon]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- None

MISSING DOIs

- 10.1137/141000671 may be a valid DOI for title: Julia: A fresh approach to numerical computing
- 10.1111/rssb.12464 may be a valid DOI for title: Non-reversible parallel tempering: a scalable highly parallel MCMC scheme
- 10.1007/s11222-012-9328-6 may be a valid DOI for title: Likelihood-free parallel tempering
- 10.2307/2348941 may be a valid DOI for title: A language and program for complex Bayesian modelling
- 10.1093/sysbio/syt022 may be a valid DOI for title: PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment
- 10.1016/j.cma.2021.114264 may be a valid DOI for title: Korali: Efficient and scalable software framework for Bayesian uncertainty quantification and stochastic optimization
- 10.1615/int.j.uncertaintyquantification.2022038478 may be a valid DOI for title: Hamiltonian Monte Carlo in inverse problems; Ill-conditioning and multimodality
- 10.1038/s41467-022-31830-2 may be a valid DOI for title: Accurate determination of CRISPR-mediated gene fitness in transplantable tumours
- 10.1145/3314221.3314642 may be a valid DOI for title: Gen: a general-purpose probabilistic programming system with programmable inference
- 10.2307/2684568 may be a valid DOI for title: Understanding the Metropolis-Hastings algorithm
- 10.21105/joss.02741 may be a valid DOI for title: ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran
- 10.1186/s12918-017-0433-1 may be a valid DOI for title: Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
- 10.1103/physrevlett.57.2607 may be a valid DOI for title: Replica Monte Carlo simulation of spin-glasses
- 10.1111/rssb.12464 may be a valid DOI for title: Non-reversible parallel tempering: a scalable highly parallel MCMC scheme
- 10.1002/sim.3680 may be a valid DOI for title: The BUGS project: evolution, critique and future directions
- 10.1093/bioinformatics/17.8.754 may be a valid DOI for title: MRBAYES: Bayesian inference of phylogenetic trees
- 10.1093/sysbio/sys029 may be a valid DOI for title: MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space
- 10.1109/wisp.2007.4447579 may be a valid DOI for title: Large scale Bayesian data analysis for nuclear fusion experiments
- 10.1007/s11222-008-9110-y may be a valid DOI for title: A tutorial on adaptive MCMC
- 10.3390/galaxies11010006 may be a valid DOI for title: The ngEHT’s Role in Measuring Supermassive Black Hole Spins
- 10.3847/1538-4357/ac09ee may be a valid DOI for title: Observing the Inner Shadow of a Black Hole: A Direct View of the Event Horizon
- 10.21105/joss.04457 may be a valid DOI for title: Comrade: Composable Modeling of Radio Emission
- 10.1198/106186006x100579 may be a valid DOI for title: Parallel Markov chain Monte Carlo simulation by pre-fetching
- 10.1198/jcgs.2010.10039 may be a valid DOI for title: On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods
- 10.1198/jcgs.2011.10167 may be a valid DOI for title: Using parallel computation to improve independent Metropolis–Hastings based estimation
- 10.1073/pnas.1408184111 may be a valid DOI for title: A general construction for parallelizing Metropolis-Hastings algorithms
- 10.4324/9781003289173-2 may be a valid DOI for title: Bayes and big data: the consensus Monte Carlo algorithm
- 10.1111/rssb.12336 may be a valid DOI for title: Unbiased Markov chain Monte Carlo methods with couplings
- 10.1145/62959.62969 may be a valid DOI for title: Efficient and Portable Combined Random Number Generators
- 10.1145/2714064.2660195 may be a valid DOI for title: Fast splittable pseudorandom number generators
- 10.1080/01621459.1990.10474918 may be a valid DOI for title: Density estimation with confidence sets exemplified by superclusters and voids in the galaxies
- 10.1093/sysbio/syq085 may be a valid DOI for title: Improving marginal likelihood estimation for Bayesian phylogenetic model selection
- 10.21105/joss.01816 may be a valid DOI for title: OnlineStats.jl: A Julia package for statistics on data streams
- 10.1145/3551624.3555300 may be a valid DOI for title: Mathematically quantifying non-responsiveness of the 2021 Georgia congressional districting plan

INVALID DOIs

- None

[nikola-sur]

@whedon commands

[whedon]

Here are some things you can ask me to do:

# List Whedon's capabilities
@whedon commands

# List of editor GitHub usernames
@whedon list editors

# List of reviewers together with programming language preferences and domain expertise
@whedon list reviewers

EDITORIAL TASKS

# Compile the paper
@whedon generate pdf

# Compile the paper from alternative branch
@whedon generate pdf from branch custom-branch-name

# Ask Whedon to check the references for missing DOIs
@whedon check references

# Ask Whedon to check repository statistics for the submitted software
@whedon check repository

[nikola-sur]

@whedon list reviewers

[whedon]

Here's the current list of reviewers: http://bit.ly/2V9GSFq

[nikola-sur]

@whedon list editors

[whedon]

Current editors:

@arfon
@carstenbauer
@fcdimitr
@lucaferranti
@luraess
@matbesancon
@odow
@pitsianis
@ranjanan
@vchuravy

[nikola-sur]

@whedon assign @pitsianis as editor

[whedon]

I'm sorry @nikola-sur, I'm afraid I can't do that. That's something only editors are allowed to do.

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'xifthen.sty' from line
  '! LaTeX Error: File `xifthen.sty' not found.'
Latexmk: Missing input file: 'xifthen.sty' from line
  '! LaTeX Error: File `xifthen.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'ifmtarg.sty' from line
  '! LaTeX Error: File `ifmtarg.sty' not found.'
Latexmk: Missing input file: 'ifmtarg.sty' from line
  '! LaTeX Error: File `ifmtarg.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'dsfont.sty' from line
  '! LaTeX Error: File `dsfont.sty' not found.'
Latexmk: Missing input file: 'dsfont.sty' from line
  '! LaTeX Error: File `dsfont.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'nicefrac.sty' from line
  '! LaTeX Error: File `nicefrac.sty' not found.'
Latexmk: Missing input file: 'nicefrac.sty' from line
  '! LaTeX Error: File `nicefrac.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'bbm.sty' from line
  '! LaTeX Error: File `bbm.sty' not found.'
Latexmk: Missing input file: 'bbm.sty' from line
  '! LaTeX Error: File `bbm.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/app/.texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (./jlcode.sty

-- Package: `jlcode' 2.1 <2018/03/06> --
(/app/.texlive/texmf-dist/tex/latex/listings/listings.sty
(/app/.texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
(/app/.texlive/texmf-dist/tex/latex/listings/listings.cfg))
(/app/.texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/app/.texlive/texmf-dist/tex/latex/base/textcomp.sty
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.def
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/app/.texlive/texmf-dist/tex/latex/eurosym/eurosym.sty)
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def))
(/app/.texlive/texmf-dist/tex/latex/tools/calc.sty)
(/app/.texlive/texmf-dist/tex/latex/base/t1cmtt.fd))
(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)
(/app/.texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def)) (./shortex.sty
(./xifthen.sty (/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty)
(./ifmtarg.sty)) (/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
(/app/.texlive/texmf-dist/tex/generic/xstring/xstring.tex))
(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (./bbm.sty)
(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty)) (./multirow.sty)
(./wrapfig.sty) (./microtype.sty
(/app/.texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(./microtype-pdftex.def)

Package microtype Warning: Could not find configuration file `microtype.cfg'!
(microtype)                This will almost certainly cause undesired results.
(microtype)                Please fix your installation.

) (/app/.texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (./xargs.sty
(/app/.texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))) (./autonum.sty
(./etextools.sty (/app/.texlive/texmf-dist/tex/latex/etex-pkg/etex.sty

Package etex Warning: Extended allocation already in use.
(etex)                etex.sty code will not be used.
(etex)                To force etex package to load, add
(etex)                \RequirePackage{etex}
(etex)                at the start of the document.

)) (./textpos.sty
Package: textpos 2020/09/26 1.10, absolute positioning of text on the page
(/app/.texlive/texmf-dist/tex/latex/ms/everyshi.sty)
Grid set 16 x 16 = 37.35457pt x 52.80228pt
TextBlockOrigin set to 0pt x 0pt
))) (./forest.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/frontendlayer/tikz.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/basiclayer/pgf.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common-lists.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def)
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfrcs.code.tex))
(/app/.texlive/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeysfiltered.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg)
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-pdf.def)))
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsysprotocol.code.tex))
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcore.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathcalc.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathutil.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathparser.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.basic.code.tex)

(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.trigonometric.c
ode.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.random.code.tex
)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.comparison.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.base.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.round.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.misc.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.integerarithmet
ics.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfloat.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepoints.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathconstruct.code.
tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathusage.code.tex)
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorescopes.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoregraphicstate.code.t
ex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransformations.cod
e.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorequick.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreobjects.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathprocessing.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorearrows.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreshade.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreimage.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreexternal.code.tex))
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorelayers.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransparency.code.t
ex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepatterns.code.tex))
) (/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleshapes.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleplot.code.tex)
(/app/.texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-0-65.sty)
 (/app/.texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-1-18.sty
)) (/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgffor.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgfkeys.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex))
(/app/.texlive/texmf-dist/tex/latex/pgf/math/pgfmath.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgffor.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/tikz.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryplothandlers.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmodulematrix.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
arytopaths.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.geometric.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.geo
metric.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.misc.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.mis
c.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.symbols.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.sym
bols.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.arrows.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.arr
ows.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.callouts.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.cal
louts.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.multipart.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.mul
tipart.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryfit.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
arycalc.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryintersections.cod
e.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryfpu.code.tex))
(./pgfopts.sty) (./elocalloc.sty)
(/app/.texlive/texmf-dist/tex/latex/environ/environ.sty
(/app/.texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))
(/app/.texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty)

! LaTeX Error: File `inlinedef.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Enter file name: 
! Emergency stop.
<read *> 
         
l.62 \newtoks
             \ID@usercommands{}^^M
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
===========Latexmk: Missing input file: 'inlinedef.sty' from line
  '! LaTeX Error: File `inlinedef.sty' not found.'
Latexmk: Missing input file: 'inlinedef.sty' from line
  '! LaTeX Error: File `inlinedef.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/app/.texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (./jlcode.sty

-- Package: `jlcode' 2.1 <2018/03/06> --
(/app/.texlive/texmf-dist/tex/latex/listings/listings.sty
(/app/.texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
(/app/.texlive/texmf-dist/tex/latex/listings/listings.cfg))
(/app/.texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/app/.texlive/texmf-dist/tex/latex/base/textcomp.sty
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.def
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/app/.texlive/texmf-dist/tex/latex/eurosym/eurosym.sty)
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def))
(/app/.texlive/texmf-dist/tex/latex/tools/calc.sty)
(/app/.texlive/texmf-dist/tex/latex/base/t1cmtt.fd))
(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)
(/app/.texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def)) (./shortex.sty
(./xifthen.sty (/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty)
(./ifmtarg.sty)) (/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
(/app/.texlive/texmf-dist/tex/generic/xstring/xstring.tex))
(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (./bbm.sty)
(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty)) (./multirow.sty)
(./wrapfig.sty) (./microtype.sty
(/app/.texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(./microtype-pdftex.def)

Package microtype Warning: Could not find configuration file `microtype.cfg'!
(microtype)                This will almost certainly cause undesired results.
(microtype)                Please fix your installation.

) (/app/.texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (./xargs.sty
(/app/.texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))) (./autonum.sty
(./etextools.sty (/app/.texlive/texmf-dist/tex/latex/etex-pkg/etex.sty

Package etex Warning: Extended allocation already in use.
(etex)                etex.sty code will not be used.
(etex)                To force etex package to load, add
(etex)                \RequirePackage{etex}
(etex)                at the start of the document.

)) (./textpos.sty
Package: textpos 2020/09/26 1.10, absolute positioning of text on the page
(/app/.texlive/texmf-dist/tex/latex/ms/everyshi.sty)
Grid set 16 x 16 = 37.35457pt x 52.80228pt
TextBlockOrigin set to 0pt x 0pt
))) (./forest.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/frontendlayer/tikz.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/basiclayer/pgf.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common-lists.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def)
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfrcs.code.tex))
(/app/.texlive/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeysfiltered.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg)
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-pdf.def)))
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsysprotocol.code.tex))
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcore.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathcalc.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathutil.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathparser.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.basic.code.tex)

(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.trigonometric.c
ode.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.random.code.tex
)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.comparison.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.base.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.round.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.misc.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.integerarithmet
ics.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfloat.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepoints.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathconstruct.code.
tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathusage.code.tex)
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorescopes.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoregraphicstate.code.t
ex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransformations.cod
e.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorequick.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreobjects.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathprocessing.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorearrows.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreshade.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreimage.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreexternal.code.tex))
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorelayers.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransparency.code.t
ex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepatterns.code.tex))
) (/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleshapes.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleplot.code.tex)
(/app/.texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-0-65.sty)
 (/app/.texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-1-18.sty
)) (/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgffor.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgfkeys.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex))
(/app/.texlive/texmf-dist/tex/latex/pgf/math/pgfmath.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgffor.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/tikz.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryplothandlers.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmodulematrix.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
arytopaths.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.geometric.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.geo
metric.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.misc.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.mis
c.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.symbols.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.sym
bols.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.arrows.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.arr
ows.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.callouts.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.cal
louts.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.multipart.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.mul
tipart.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryfit.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
arycalc.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryintersections.cod
e.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryfpu.code.tex))
(./pgfopts.sty) (./elocalloc.sty)
(/app/.texlive/texmf-dist/tex/latex/environ/environ.sty
(/app/.texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))
(/app/.texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty)
(./inlinedef.sty)) (./paper.aux)
(/app/.texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/app/.texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/app/.texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/app/.texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/app/.texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))

Package microtype Warning: Unable to apply patch `footnote' on input line 27.


Package microtype Warning: No protrusion set chosen, no default set declared. 
(microtype)                Using empty set.


Package microtype Warning: No expansion set chosen, no default set declared. 
(microtype)                Using empty set.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.

ABD: EveryShipout initializing macros

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(/app/.texlive/texmf-dist/tex/latex/base/ulasy.fd)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(/app/.texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(/app/.texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(./header.tex)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/20.74'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/b/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/b/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/b/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 33.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/b/n/10'. Switching off
(microtype)                protrusion for this font on input line 33.

(./introduction.tex

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/b/n/9'. Switching off
(microtype)                protrusion for this font on input line 5.


LaTeX Warning: Citation `akiyama2021seven' on page 1 undefined on input line 5.



LaTeX Warning: Citation `akiyama2022first' on page 1 undefined on input line 6.



LaTeX Warning: Citation `salehi2021clonal' on page 1 undefined on input line 8.



LaTeX Warning: Citation `gota2021overview' on page 1 undefined on input line 9.



LaTeX Warning: Citation `zhao2022mathematically' on page 1 undefined on input l
ine 11.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 19.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/cmtt/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/cmtt/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


LaTeX Warning: Citation `syed2021nrpt' on page 1 undefined on input line 24.


LaTeX Warning: Citation `surjanovic2022vpt' on page 1 undefined on input line 2
4.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/it/9'. Switching off
(microtype)                protrusion for this font on input line 28.


Underfull \hbox (badness 3364) in paragraph at lines 19--34
[]\T1/ptm/m/n/9 (+20) Pigeons.jl[][][] en-ables users to sam-ple ef-fi-ciently 
from high-

Underfull \hbox (badness 10000) has occurred while \output is active
  
[1{/app/.texlive/texmf-var/fonts/map/pdftex/updmap/pdftex.map}
Non-PDF special ignored!
! pdfTeX error (font expansion): auto expansion is only possible with scalable 
fonts.
\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
                                                  \fi \fi 
l.79     \item W
                hen the target distribution $\pi$ is defined over a non-stan...
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
Latexmk: List of undefined refs and citations:
  Citation `akiyama2021seven' on page 1 undefined on input line 5
  Citation `akiyama2022first' on page 1 undefined on input line 6
  Citation `gota2021overview' on page 1 undefined on input line 9
  Citation `salehi2021clonal' on page 1 undefined on input line 8
  Citation `surjanovic2022vpt' on page 1 undefined on input line 24
  Citation `syed2021nrpt' on page 1 undefined on input line 24
  Citation `zhao2022mathematically' on page 1 undefined on input line 11
Latexmk: Summary of warnings:
  Latex failed to resolve 11 citation(s)
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.aux'
------------
Run number 2 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/app/.texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (./jlcode.sty

-- Package: `jlcode' 2.1 <2018/03/06> --
(/app/.texlive/texmf-dist/tex/latex/listings/listings.sty
(/app/.texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
(/app/.texlive/texmf-dist/tex/latex/listings/listings.cfg))
(/app/.texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/app/.texlive/texmf-dist/tex/latex/base/textcomp.sty
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.def
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/app/.texlive/texmf-dist/tex/latex/eurosym/eurosym.sty)
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def))
(/app/.texlive/texmf-dist/tex/latex/tools/calc.sty)
(/app/.texlive/texmf-dist/tex/latex/base/t1cmtt.fd))
(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)
(/app/.texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def)) (./shortex.sty
(./xifthen.sty (/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty)
(./ifmtarg.sty)) (/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
(/app/.texlive/texmf-dist/tex/generic/xstring/xstring.tex))
(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (./bbm.sty)
(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty)) (./multirow.sty)
(./wrapfig.sty) (./microtype.sty
(/app/.texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(./microtype-pdftex.def)

Package microtype Warning: Could not find configuration file `microtype.cfg'!
(microtype)                This will almost certainly cause undesired results.
(microtype)                Please fix your installation.

) (/app/.texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (./xargs.sty
(/app/.texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))) (./autonum.sty
(./etextools.sty (/app/.texlive/texmf-dist/tex/latex/etex-pkg/etex.sty

Package etex Warning: Extended allocation already in use.
(etex)                etex.sty code will not be used.
(etex)                To force etex package to load, add
(etex)                \RequirePackage{etex}
(etex)                at the start of the document.

)) (./textpos.sty
Package: textpos 2020/09/26 1.10, absolute positioning of text on the page
(/app/.texlive/texmf-dist/tex/latex/ms/everyshi.sty)
Grid set 16 x 16 = 37.35457pt x 52.80228pt
TextBlockOrigin set to 0pt x 0pt
))) (./forest.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/frontendlayer/tikz.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/basiclayer/pgf.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common-lists.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def)
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfrcs.code.tex))
(/app/.texlive/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeysfiltered.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg)
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-pdf.def)))
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsysprotocol.code.tex))
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcore.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathcalc.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathutil.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathparser.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.basic.code.tex)

(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.trigonometric.c
ode.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.random.code.tex
)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.comparison.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.base.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.round.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.misc.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.integerarithmet
ics.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfloat.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepoints.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathconstruct.code.
tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathusage.code.tex)
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorescopes.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoregraphicstate.code.t
ex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransformations.cod
e.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorequick.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreobjects.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathprocessing.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorearrows.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreshade.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreimage.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreexternal.code.tex))
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorelayers.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransparency.code.t
ex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepatterns.code.tex))
) (/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleshapes.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleplot.code.tex)
(/app/.texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-0-65.sty)
 (/app/.texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-1-18.sty
)) (/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgffor.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgfkeys.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex))
(/app/.texlive/texmf-dist/tex/latex/pgf/math/pgfmath.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgffor.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/tikz.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryplothandlers.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmodulematrix.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
arytopaths.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.geometric.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.geo
metric.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.misc.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.mis
c.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.symbols.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.sym
bols.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.arrows.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.arr
ows.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.callouts.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.cal
louts.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.multipart.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.mul
tipart.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryfit.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
arycalc.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryintersections.cod
e.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryfpu.code.tex))
(./pgfopts.sty) (./elocalloc.sty)
(/app/.texlive/texmf-dist/tex/latex/environ/environ.sty
(/app/.texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))
(/app/.texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty)
(./inlinedef.sty)) (./paper.aux)
(/app/.texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/app/.texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/app/.texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/app/.texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/app/.texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./paper.out) (./paper.out)

Package microtype Warning: Unable to apply patch `footnote' on input line 27.


Package microtype Warning: No protrusion set chosen, no default set declared. 
(microtype)                Using empty set.


Package microtype Warning: No expansion set chosen, no default set declared. 
(microtype)                Using empty set.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.

ABD: EveryShipout initializing macros

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(/app/.texlive/texmf-dist/tex/latex/base/ulasy.fd)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(/app/.texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(/app/.texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(./header.tex)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/20.74'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/b/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/b/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/b/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 33.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/b/n/10'. Switching off
(microtype)                protrusion for this font on input line 33.

(./introduction.tex

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/b/n/9'. Switching off
(microtype)                protrusion for this font on input line 5.


LaTeX Warning: Citation `akiyama2021seven' on page 1 undefined on input line 5.



LaTeX Warning: Citation `akiyama2022first' on page 1 undefined on input line 6.



LaTeX Warning: Citation `salehi2021clonal' on page 1 undefined on input line 8.



LaTeX Warning: Citation `gota2021overview' on page 1 undefined on input line 9.



LaTeX Warning: Citation `zhao2022mathematically' on page 1 undefined on input l
ine 11.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 19.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/cmtt/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/cmtt/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


LaTeX Warning: Citation `syed2021nrpt' on page 1 undefined on input line 24.


LaTeX Warning: Citation `surjanovic2022vpt' on page 1 undefined on input line 2
4.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/it/9'. Switching off
(microtype)                protrusion for this font on input line 28.


Underfull \hbox (badness 3364) in paragraph at lines 19--34
[]\T1/ptm/m/n/9 (+20) Pigeons.jl[][][] en-ables users to sam-ple ef-fi-ciently 
from high-

Underfull \hbox (badness 10000) has occurred while \output is active
  
[1{/app/.texlive/texmf-var/fonts/map/pdftex/updmap/pdftex.map}
Non-PDF special ignored!
! pdfTeX error (font expansion): auto expansion is only possible with scalable 
fonts.
\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
                                                  \fi \fi 
l.79     \item W
                hen the target distribution $\pi$ is defined over a non-stan...
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
Latexmk: List of undefined refs and citations:
  Citation `akiyama2021seven' on page 1 undefined on input line 5
  Citation `akiyama2022first' on page 1 undefined on input line 6
  Citation `gota2021overview' on page 1 undefined on input line 9
  Citation `salehi2021clonal' on page 1 undefined on input line 8
  Citation `surjanovic2022vpt' on page 1 undefined on input line 24
  Citation `syed2021nrpt' on page 1 undefined on input line 24
  Citation `zhao2022mathematically' on page 1 undefined on input line 11
Latexmk: Summary of warnings:
  Latex failed to resolve 11 citation(s)
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.out'
------------
Run number 3 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/app/.texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (./jlcode.sty

-- Package: `jlcode' 2.1 <2018/03/06> --
(/app/.texlive/texmf-dist/tex/latex/listings/listings.sty
(/app/.texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
(/app/.texlive/texmf-dist/tex/latex/listings/listings.cfg))
(/app/.texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/app/.texlive/texmf-dist/tex/latex/base/textcomp.sty
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.def
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/app/.texlive/texmf-dist/tex/latex/eurosym/eurosym.sty)
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def))
(/app/.texlive/texmf-dist/tex/latex/tools/calc.sty)
(/app/.texlive/texmf-dist/tex/latex/base/t1cmtt.fd))
(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)
(/app/.texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def)) (./shortex.sty
(./xifthen.sty (/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty)
(./ifmtarg.sty)) (/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
(/app/.texlive/texmf-dist/tex/generic/xstring/xstring.tex))
(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (./bbm.sty)
(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty)) (./multirow.sty)
(./wrapfig.sty) (./microtype.sty
(/app/.texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(./microtype-pdftex.def)

Package microtype Warning: Could not find configuration file `microtype.cfg'!
(microtype)                This will almost certainly cause undesired results.
(microtype)                Please fix your installation.

) (/app/.texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (./xargs.sty
(/app/.texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))) (./autonum.sty
(./etextools.sty (/app/.texlive/texmf-dist/tex/latex/etex-pkg/etex.sty

Package etex Warning: Extended allocation already in use.
(etex)                etex.sty code will not be used.
(etex)                To force etex package to load, add
(etex)                \RequirePackage{etex}
(etex)                at the start of the document.

)) (./textpos.sty
Package: textpos 2020/09/26 1.10, absolute positioning of text on the page
(/app/.texlive/texmf-dist/tex/latex/ms/everyshi.sty)
Grid set 16 x 16 = 37.35457pt x 52.80228pt
TextBlockOrigin set to 0pt x 0pt
))) (./forest.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/frontendlayer/tikz.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/basiclayer/pgf.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common-lists.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def)
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfrcs.code.tex))
(/app/.texlive/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeysfiltered.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg)
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-pdf.def)))
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsysprotocol.code.tex))
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcore.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathcalc.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathutil.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathparser.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.basic.code.tex)

(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.trigonometric.c
ode.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.random.code.tex
)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.comparison.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.base.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.round.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.misc.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.integerarithmet
ics.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmathfloat.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepoints.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathconstruct.code.
tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathusage.code.tex)
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorescopes.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoregraphicstate.code.t
ex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransformations.cod
e.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorequick.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreobjects.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathprocessing.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorearrows.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreshade.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreimage.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreexternal.code.tex))
 (/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorelayers.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransparency.code.t
ex)
(/app/.texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepatterns.code.tex))
) (/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleshapes.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleplot.code.tex)
(/app/.texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-0-65.sty)
 (/app/.texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-1-18.sty
)) (/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgffor.sty
(/app/.texlive/texmf-dist/tex/latex/pgf/utilities/pgfkeys.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex))
(/app/.texlive/texmf-dist/tex/latex/pgf/math/pgfmath.sty
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/utilities/pgffor.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/tikz.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryplothandlers.code
.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/modules/pgfmodulematrix.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
arytopaths.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.geometric.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.geo
metric.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.misc.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.mis
c.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.symbols.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.sym
bols.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.arrows.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.arr
ows.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.callouts.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.cal
louts.code.tex))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryshapes.multipart.code.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshapes.mul
tipart.code.tex)))
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
aryfit.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibr
arycalc.code.tex)
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryintersections.cod
e.tex
(/app/.texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryfpu.code.tex))
(./pgfopts.sty) (./elocalloc.sty)
(/app/.texlive/texmf-dist/tex/latex/environ/environ.sty
(/app/.texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))
(/app/.texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty)
(./inlinedef.sty)) (./paper.aux)
(/app/.texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/app/.texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/app/.texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/app/.texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/app/.texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./paper.out) (./paper.out)

Package microtype Warning: Unable to apply patch `footnote' on input line 27.


Package microtype Warning: No protrusion set chosen, no default set declared. 
(microtype)                Using empty set.


Package microtype Warning: No expansion set chosen, no default set declared. 
(microtype)                Using empty set.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.

ABD: EveryShipout initializing macros

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(/app/.texlive/texmf-dist/tex/latex/base/ulasy.fd)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(/app/.texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(/app/.texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/9'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 27.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/5'. Switching off
(microtype)                protrusion for this font on input line 27.

(./header.tex)

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/20.74'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/b/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/b/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/b/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/17.28'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/12'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 31.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/10'. Switching off
(microtype)                protrusion for this font on input line 33.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/b/n/10'. Switching off
(microtype)                protrusion for this font on input line 33.

(./introduction.tex

Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/b/n/9'. Switching off
(microtype)                protrusion for this font on input line 5.


LaTeX Warning: Citation `akiyama2021seven' on page 1 undefined on input line 5.



LaTeX Warning: Citation `akiyama2022first' on page 1 undefined on input line 6.



LaTeX Warning: Citation `salehi2021clonal' on page 1 undefined on input line 8.



LaTeX Warning: Citation `gota2021overview' on page 1 undefined on input line 9.



LaTeX Warning: Citation `zhao2022mathematically' on page 1 undefined on input l
ine 11.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/n/6'. Switching off
(microtype)                protrusion for this font on input line 19.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/cmtt/m/n/8'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/cmtt/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/m/it/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMX/cmex/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OT1/cmr/bx/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OML/cmm/b/it/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `OMS/cmsy/b/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/lasy/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msa/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `U/msb/m/n/7'. Switching off
(microtype)                protrusion for this font on input line 21.


LaTeX Warning: Citation `syed2021nrpt' on page 1 undefined on input line 24.


LaTeX Warning: Citation `surjanovic2022vpt' on page 1 undefined on input line 2
4.


Package microtype Warning: I cannot find a protrusion list for font
(microtype)                `T1/ptm/m/it/9'. Switching off
(microtype)                protrusion for this font on input line 28.


Underfull \hbox (badness 3364) in paragraph at lines 19--34
[]\T1/ptm/m/n/9 (+20) Pigeons.jl[][][] en-ables users to sam-ple ef-fi-ciently 
from high-

Underfull \hbox (badness 10000) has occurred while \output is active
  
[1{/app/.texlive/texmf-var/fonts/map/pdftex/updmap/pdftex.map}
Non-PDF special ignored!
! pdfTeX error (font expansion): auto expansion is only possible with scalable 
fonts.
\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
                                                  \fi \fi 
l.79     \item W
                hen the target distribution $\pi$ is defined over a non-stan...
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
Latexmk: List of undefined refs and citations:
  Citation `akiyama2021seven' on page 1 undefined on input line 5
  Citation `akiyama2022first' on page 1 undefined on input line 6
  Citation `gota2021overview' on page 1 undefined on input line 9
  Citation `salehi2021clonal' on page 1 undefined on input line 8
  Citation `surjanovic2022vpt' on page 1 undefined on input line 24
  Citation `syed2021nrpt' on page 1 undefined on input line 24
  Citation `zhao2022mathematically' on page 1 undefined on input line 11
Latexmk: Summary of warnings:
  Latex failed to resolve 11 citation(s)
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[miguelbiron]

@pitsianis @nikola-sur success!!!

[nikola-sur]

Nice!!

[pitsianis]

@whedon commands

[whedon]

Here are some things you can ask me to do:

# List all of Whedon's capabilities
@whedon commands

# Assign a GitHub user as the sole reviewer of this submission
@whedon assign @username as reviewer

# Add a GitHub user to the reviewers of this submission
@whedon add @username as reviewer

# Re-invite a reviewer (if they can't update checklists)
@whedon re-invite @username as reviewer

# Remove a GitHub user from the reviewers of this submission
@whedon remove @username as reviewer

# List of editor GitHub usernames
@whedon list editors

# List of reviewers together with programming language preferences and domain expertise
@whedon list reviewers

# Change editorial assignment
@whedon assign @username as editor

# Set the software archive DOI at the top of the issue e.g.
@whedon set 10.0000/zenodo.00000 as archive

# Set the software version at the top of the issue e.g.
@whedon set v1.0.1 as version

# Open the review issue
@whedon start review

EDITORIAL TASKS

# All commands can be run on a non-default branch, to do this pass a custom 
# branch name by following the command with `from branch custom-branch-name`.
# For example:

# Compile the paper
@whedon generate pdf

# Compile the paper from alternative branch
@whedon generate pdf from branch custom-branch-name

# Remind an author or reviewer to return to a review after a
# certain period of time (supported units days and weeks)
@whedon remind @reviewer in 2 weeks

# Ask Whedon to do a dry run of accepting the paper and depositing with Crossref
@whedon recommend-accept

# Ask Whedon to check the references for missing DOIs
@whedon check references

# Ask Whedon to check repository statistics for the submitted software
@whedon check repository

EiC TASKS

# Invite an editor to edit a submission (sending them an email)
@whedon invite @editor as editor

# Reject a paper
@whedon reject

# Withdraw a paper
@whedon withdraw

# Ask Whedon to actually accept the paper and deposit with Crossref
@whedon accept deposit=true

[whedon]

Here are some things you can ask me to do:

# List all of Whedon's capabilities
@whedon commands

# Assign a GitHub user as the sole reviewer of this submission
@whedon assign @username as reviewer

# Add a GitHub user to the reviewers of this submission
@whedon add @username as reviewer

# Re-invite a reviewer (if they can't update checklists)
@whedon re-invite @username as reviewer

# Remove a GitHub user from the reviewers of this submission
@whedon remove @username as reviewer

# List of editor GitHub usernames
@whedon list editors

# List of reviewers together with programming language preferences and domain expertise
@whedon list reviewers

# Change editorial assignment
@whedon assign @username as editor

# Set the software archive DOI at the top of the issue e.g.
@whedon set 10.0000/zenodo.00000 as archive

# Set the software version at the top of the issue e.g.
@whedon set v1.0.1 as version

# Open the review issue
@whedon start review

EDITORIAL TASKS

# All commands can be run on a non-default branch, to do this pass a custom 
# branch name by following the command with `from branch custom-branch-name`.
# For example:

# Compile the paper
@whedon generate pdf

# Compile the paper from alternative branch
@whedon generate pdf from branch custom-branch-name

# Remind an author or reviewer to return to a review after a
# certain period of time (supported units days and weeks)
@whedon remind @reviewer in 2 weeks

# Ask Whedon to do a dry run of accepting the paper and depositing with Crossref
@whedon recommend-accept

# Ask Whedon to check the references for missing DOIs
@whedon check references

# Ask Whedon to check repository statistics for the submitted software
@whedon check repository

EiC TASKS

# Invite an editor to edit a submission (sending them an email)
@whedon invite @editor as editor

# Reject a paper
@whedon reject

# Withdraw a paper
@whedon withdraw

# Ask Whedon to actually accept the paper and deposit with Crossref
@whedon accept deposit=true

[pitsianis]

@whedon assign @pitsianis as editor

[whedon]

OK, the editor is @pitsianis

[pitsianis]

@whedon add @nsailor as reviewer

[whedon]

OK, @nsailor is now a reviewer

[pitsianis]

@whedon list reviewers

[whedon]

Here's the current list of reviewers: http://bit.ly/2V9GSFq

[pitsianis]

@whedon add @georgebisbas as reviewer

[whedon]

OK, @georgebisbas is now a reviewer

[pitsianis]

@whedon start review

[whedon]

OK, I've started the review over in #139.