Processing multiple .enex files at a time and link paths getting messed up

[johnmarshall4]

I've tried batch processing .enex files a few times over the last year and I never quite got it to work. If I convert an individual notebook at a time, everything is working great. But if I select multiple notebooks at a time, I end up with paths in my links that point to an incorrect notebook. Sometimes it seems randomly. I haven't been able to figure out a configuration that will make this work.

For example if I have two notebooks, notebook 1 and notebook 2 and I batch them, all the links in the notes of notebook 1 will have the path of notebook 2 even if the links are to notes in notebook 1:
notebook 2/Note 1 in notebook 1
notebook 2/Note 2 in notebook 1
In notebook 2 they also point to notebook 2.

If I try to convert more than two is just seems random what the path will be.

I've tried creating TOC notes in each notebook, but then things get even stranger because then it seems like links to other Notes that were not part of the conversion end up just pointing to the TOC note.

Any idea how to make batching work?