diff --git a/tasks/broad/Qc.wdl b/tasks/broad/Qc.wdl index 0ff525b571..0a5fdffa65 100644 --- a/tasks/broad/Qc.wdl +++ b/tasks/broad/Qc.wdl @@ -34,7 +34,7 @@ task CollectQualityYieldMetrics { OUTPUT=~{metrics_filename} } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" disks: "local-disk " + disk_size + " HDD" memory: "3500 MiB" preemptible: preemptible_tries @@ -72,7 +72,7 @@ task CollectUnsortedReadgroupBamQualityMetrics { touch ~{output_bam_prefix}.insert_size_histogram.pdf } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" memory: "7000 MiB" disks: "local-disk " + disk_size + " HDD" preemptible: preemptible_tries @@ -124,7 +124,7 @@ task CollectReadgroupBamQualityMetrics { METRIC_ACCUMULATION_LEVEL=READ_GROUP } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" memory: "7000 MiB" disks: "local-disk " + disk_size + " HDD" preemptible: preemptible_tries @@ -178,7 +178,7 @@ task CollectAggregationMetrics { METRIC_ACCUMULATION_LEVEL=LIBRARY } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" memory: "7000 MiB" disks: "local-disk " + disk_size + " HDD" preemptible: preemptible_tries @@ -229,7 +229,7 @@ task ConvertSequencingArtifactToOxoG { --REFERENCE_SEQUENCE ~{ref_fasta} } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" memory: "~{memory_size} MiB" disks: "local-disk " + disk_size + " HDD" preemptible: preemptible_tries @@ -267,7 +267,7 @@ task CrossCheckFingerprints { CROSSCHECK_BY=~{cross_check_by} >>> runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" preemptible: preemptible_tries memory: "3500 MiB" disks: "local-disk " + disk_size + " HDD" @@ -337,7 +337,7 @@ task CheckFingerprintTask { >>> runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" disks: "local-disk " + disk_size + " HDD" memory: "~{memory_size} MiB" preemptible: preemptible_tries @@ -437,7 +437,7 @@ task ValidateSamFile { IS_BISULFITE_SEQUENCED=false } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" preemptible: preemptible_tries memory: "~{memory_size} MiB" disks: "local-disk " + disk_size + " HDD" @@ -475,7 +475,7 @@ task CollectWgsMetrics { READ_LENGTH=~{read_length} } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" preemptible: preemptible_tries memory: "3000 MiB" disks: "local-disk " + disk_size + " HDD" @@ -518,7 +518,7 @@ task CollectRawWgsMetrics { READ_LENGTH=~{read_length} } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" preemptible: preemptible_tries memory: "~{memory_size} GiB" disks: "local-disk " + disk_size + " HDD" @@ -567,7 +567,7 @@ task CollectHsMetrics { } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" preemptible: preemptible_tries memory: "~{memory_size} MiB" disks: "local-disk " + disk_size + " HDD" @@ -596,7 +596,7 @@ task CalculateReadGroupChecksum { OUTPUT=~{read_group_md5_filename} } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" preemptible: preemptible_tries memory: "4000 MiB" disks: "local-disk " + disk_size + " HDD" @@ -689,7 +689,7 @@ task CollectVariantCallingMetrics { ~{true="GVCF_INPUT=true" false="" is_gvcf} } runtime { - docker: "us.gcr.io/broad-gotc-prod/picard-cloud:2.26.10" + docker: "us.gcr.io/broad-gotc-prod/picard-cloud:3.1.1" preemptible: preemptible_tries memory: "3000 MiB" disks: "local-disk " + disk_size + " HDD"