extension collection workflow working

packages/app/src/cli/services/generate/workflows/editor-extension-collection.ts

@@ -1,7 +1,8 @@
 import {Workflow} from './registry.js'
-import {patchAppConfigurationFile} from '../../app/patch-app-configuration-file.js'
 import {joinPath} from '@shopify/cli-kit/node/path'
 import {renderTextPrompt} from '@shopify/cli-kit/node/ui'
+import {readFile, writeFile} from '@shopify/cli-kit/node/fs'
+import {decodeToml, encodeToml} from '@shopify/cli-kit/node/toml'
 
 export const editorExtensionCollection: Workflow = {
   afterGenerate: async (options) => {
@@ -13,14 +14,15 @@ export const editorExtensionCollection: Workflow = {
     const extensions = await renderTextPrompt({
       message: `The extension handles to include in the collection, comma separated. Options: ${availableExtensions}`,
     })
-    await patchAppConfigurationFile({
-      path: joinPath(options.generatedExtension.directory, 'shopify.extension.toml'),
-      patch: {
-        extensions: {
-          includes: extensions.split(',').map((handle) => handle.trim()),
-        },
-      },
-      schema: options.generateOptions.app.configSchema,
-    })
+    const tomlPath = joinPath(options.generatedExtension.directory, 'shopify.extension.toml')
+    const tomlContents = await readFile(tomlPath)
+    const configuration = decodeToml(tomlContents)
+    if (configuration.extensions && Array.isArray(configuration.extensions) && configuration.extensions.length > 0) {
+      ;(configuration.extensions[0] as {includes: string[]}).includes = extensions
+        .split(',')
+        .map((handle) => handle.trim())
+    }
+    const encodedString = encodeToml(configuration)
+    await writeFile(tomlPath, encodedString)
   },
 }